SRA Toolkit

Posts in the 'SRA Toolkit' category

A collection of tools and libraries for using data in the INSDC Sequence Read Archives.

http://ncbi.github.io/sra-tools/

Technologies
- All Technologies
- Illumina
  - HiSeq
  - MiSeq
  - NextSeq
  - X Ten
- PacBio

Applications
- All Applications
- ChIP-Seq
- Genome Sequencing
- Hi-C
- Methylation
  - BS-Seq
  - PBAT
  - RRBS
- RNA-Seq
  - mRNA-Seq
  - Small RNA-Seq

Analysis Types
- Differential Expression
- Gene Ontology

Software
- Analysis Software
  - Preseq
  - SeqMonk
- Correction
  - Skewer
  - Trim Galore!
- Data Processing
  - Bismark
  - Bowtie2
  - bwa-meth
  - Cutadapt
  - HISAT2
  - SRA Toolkit
- HiCUP
- Picard
- QC Software
  - BamQC
  - DupRadar
  - FastQ Screen
  - FastQC
  - MultiQC
  - RSeQC

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