Figures and Graphs

In addition to the main areas of the SeqMonk display there are a number of additional figures and graphs which can be produced on demand. These can help to illustrate different properties of your data.

The currently available additional figures are:

Histograms and distribution summaries

• The Probe Value Histogram
• The Probe Length Histogram
• The Reading Length Histogram
• The BoxWhisker Plot
• The Star Wars Plot
• The Cumulative Distribution Plot

Clustering and correlation

• The DataStore Tree
• The Correlation Matrix
• The Probe List Overlap Matrix
• The Venn Diagram Plot
• The Hierarchical Cluster Plot

Quantitation aggregation and summaries

• The Probe Trend Plot
• The Aligned Probes Plot
• The Quantitation Trend Plot
• The Domainogram Plot

Comparison plots

• The Scatter Plot
• The MA Plot
• The Line Graph

Hi-C Specific Plots

• The HiC Cis-Trans Scatterplot
• The HiC Length Histogram
• The HiC Heatmap Plot

QC Plots

• The RNA-Seq QC plot
• The Small RNA QC plot