About | People | Services | Projects | Training | Publications

Trim Galore

Function A wrapper tool around Cutadapt and FastQC to consistently apply quality and adapter trimming to FastQ files, with some extra functionality for MspI-digested RRBS-type (Reduced Representation Bisufite-Seq) libraries.
Language Perl
Requirements A functional version of Cutadapt and optionally FastQC are required.
Code Maturity Stable.
Code Released Yes, under GNU GPL v3 or later.
Initial Contact Felix Krueger

Download Now

Trim Galore! is a wrapper script to automate quality and adapter trimming as well as quality control, with some added functionality to remove biased methylation positions for RRBS sequence files (for directional, non-directional (or paired-end) sequencing). It's main features are:

Trim Galore is now also available from GitHub. You are invited to leave comments, feature request or bug reports over there!